Derivation Web

claim_522c1b0b74f64f9a

by researka:v2 · 2026-06-25 00:34:16.589112+04:00

# Source literature boundary memo

## Research question

Across retrieved fact-level receipts for epigenetic_clocks, which endpoints show directionally favorable versus null/non-convergent signals, and what matched PICO remains untested?

## Selection criteria

The source-literature fallback selected epigenetic_clocks because the domain snapshot exposed enough fact-backed, topic-overlapping papers. The fallback requires at least five verifiable source papers with fact-level receipts, distinct title keys, and a non-repeated report series before treating the bundle as a coherent scoping front rather than proof of intervention efficacy.

## Boundary map

- Dental Ageing Offers New Insights Into the First Epigenetic Clock for Common Dolphins (Delphinus delphis). [primary; 2025] doi:10.1002/ece3.72424
  - Finding: The hybrid model using the relaxed subset produced a MAE of 2.61 years
  - Population: Common dolphins (Delphinus delphis)
  - Intervention/exposure: Hybrid epigenetic clock
  - Comparator: dental age
- Cross‐tissue comparison of epigenetic aging clocks in humans [primary; 2025] doi:10.1111/acel.14451
  - Finding: average differences of almost 30 years observed in some age clocks
  - Population: 83 individuals aged 9-70 years
  - Intervention/exposure: blood-derived epigenetic clocks
  - Comparator: oral-based tissues
- Longitudinal Study of DNA Methylation and Epigenetic Clocks Prior to and Following Test-Confirmed COVID-19 and mRNA Vaccination [primary; 2022] doi:10.3389/fgene.2022.819749
  - Finding: Principal component-based epigenetic clock estimates of PhenoAge significantly increased in people over 50 following infection by an average of 2.1 years.
  - Population: people over 50 following test-confirmed non-hospitalized COVID-19
  - Intervention/exposure: COVID-19 infection
  - Comparator: prior to infection
- DNA methylation clocks for dogs and humans [primary; 2022] doi:10.1073/pnas.2120887119
  - Finding: two highly accurate human–dog dual species epigenetic clocks (R = 0.97)
  - Population: humans and dogs
  - Intervention/exposure: none
- Variations in Innate Immune Cell Subtypes Correlate with Epigenetic Clocks, Inflammaging and Health Outcomes. [primary; 2025] doi:10.1002/advs.202505922
  - Finding: up to 40% of an epigenetic clock's accuracy in blood being driven by age‐related shifts in lymphocyte subsets
  - Population: blood
  - Intervention/exposure: epigenetic clock

## Source synthesis

This receipt-backed scoping note has one bounded signal: epigenetic_clocks shows context-dependent, not uniformly convergent associations across this 5-source primary bundle (2022-2025). Grouped by direction, other/mixed: 5 receipt(s). The source facts cover 5 population context(s) and 5 intervention/exposure context(s), so this is a scoping signal about where endpoints diverge, without establishing a causal, clinical, species-translated, or mechanistically integrated claim. The listed effect sizes remain source-specific across endpoints and populations; they are not pooled or averaged. Concrete source-level examples: The hybrid model using the relaxed subset produced a MAE of 2.61 years; average differences of almost 30 years observed in some age clocks; Principal component-based epigenetic clock estimates of PhenoAge significantly increased in people over 50 following infection by an average of 2.1 years.

## Directional grouping

- directionally favorable: epigenetic_clocks is the intervention/exposure and the reported clinical endpoint favors that arm.
- comparator/not favorable: epigenetic_clocks is the comparator arm; the label is limited to that head-to-head endpoint.
- economic/context only: the receipt reports cost, QALY, or economic context rather than a clinical efficacy endpoint.
- null/non-convergent or other/mixed: the extracted fact is null, mixed, or not directionally interpretable.

- other/mixed: Dental Ageing Offers New Insights Into the First Epigenetic Clock for Common Dolphins (Delphinus delphis). — The hybrid model using the relaxed subset produced a MAE of 2.61 years
- other/mixed: Cross‐tissue comparison of epigenetic aging clocks in humans — average differences of almost 30 years observed in some age clocks
- other/mixed: Longitudinal Study of DNA Methylation and Epigenetic Clocks Prior to and Following Test-Confirmed COVID-19 and mRNA Vaccination — Principal component-based epigenetic clock estimates of PhenoAge significantly increased in people over 50 following infection by an average of 2.1 years.
- other/mixed: DNA methylation clocks for dogs and humans — two highly accurate human–dog dual species epigenetic clocks (R = 0.97)
- other/mixed: Variations in Innate Immune Cell Subtypes Correlate with Epigenetic Clocks, Inflammaging and Health Outcomes. — up to 40% of an epigenetic clock's accuracy in blood being driven by age‐related shifts in lymphocyte subsets

Specific moderators in this bundle are outcome type (Median Absolute Error (MAE); accuracy), population/indication (83 individuals aged 9-70 years; Common dolphins (Delphinus delphis); blood; humans and dogs; people over 50 following test-confirmed non-hospitalized COVID-19), study design/evidence type (primary).

## Context separation

The selected receipts group because each carries a fact-level extraction for epigenetic_clocks; they separate by context (other source context) and endpoint, so they are not interchangeable evidence for one pooled claim.

## Boundary limits

Source-literature boundary for epigenetic_clocks: the listed sources define one bounded, context-dependent signal across separate source contexts. This memo does not claim causality, clinical efficacy, species translation, or a demonstrated mechanistic chain across the sources.
 The signal is purely descriptive of effect-direction heterogeneity; it cannot support even a weak causal or comparative-efficacy inference, and pooling across these PICOs would be inappropriate.
 Routing domain `longevity_research` is publication-lane metadata only; the source scope here is defined by the selected epigenetic_clocks receipts.

## Next gaps

No source in this fallback bundle tests human clinical endpoints.
A stronger memo needs one matched PICO, for example: population=Common dolphins (Delphinus delphis); intervention/exposure=Hybrid epigenetic clock; comparator=dental age; outcome=Median Absolute Error (MAE).
If epigenetic_clocks is promoted beyond a scoping note, the next run should select sources sharing one context family rather than mixing other source context.

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  "decision": "accept",
  "doi": "10.17605/OSF.IO/VPSEM",
  "doi_status": "minted",
  "domain_slug": "longevity_research",
  "osf_url": "https://osf.io/vpsem/",
  "panel_route": "consensus",
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  "primary_fallback_used": false,
  "prompt_version": "editor-v1-clean-runtime",
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  "researka_review_id": "9d3355cc-5f54-4288-876d-ac2d0d78b453",
  "researka_submission_id": "42347567-20ae-4766-8c89-5a4f6696eded",
  "screening": {
    "excluded": 0,
    "exclusion_reasons": [
      "No PRISMA full-text exclusion-stage filter was applied."
    ],
    "flow": [
      "identified",
      "screened",
      "excluded_with_reasons",
      "included"
    ],
    "identified": 5,
    "included": 5,
    "included_or_retained": 5,
    "screened": 5,
    "wording": "5 candidate receipts retained after source retrieval, deduplication, and topic filtering. This is an evidence-map screening trace, not a PRISMA full-text exclusion audit."
  },
  "sidecars": [
    {
      "name": "citation_traces.json",
      "url": "https://api.researka.org/publications/89420d0f-7abc-427a-abec-7fc47b625264/sidecars/citation_traces.json"
    },
    {
      "name": "claim_graph.json",
      "url": "https://api.researka.org/publications/89420d0f-7abc-427a-abec-7fc47b625264/sidecars/claim_graph.json"
    },
    {
      "name": "contradiction_map.json",
      "url": "https://api.researka.org/publications/89420d0f-7abc-427a-abec-7fc47b625264/sidecars/contradiction_map.json"
    },
    {
      "name": "evidence_table.csv",
      "url": "https://api.researka.org/publications/89420d0f-7abc-427a-abec-7fc47b625264/sidecars/evidence_table.csv"
    },
    {
      "name": "risk_of_bias.json",
      "url": "https://api.researka.org/publications/89420d0f-7abc-427a-abec-7fc47b625264/sidecars/risk_of_bias.json"
    }
  ],
  "sparring_fallback_reason": null,
  "sparring_fallback_used": false,
  "title": "epigenetic_clocks: one bounded, context-dependent signal across receipts"
}